David Gavaghan: Publications

Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

Bernabeu MO, Bordas R, Pathmanathan P, Pitt-Francis J, Cooper J, Garny A, Gavaghan DJ, Rodriguez B, Southern JA, Whiteley JP

Phil Trans Roy Soc (A), Vol. 367, No. 1895, pages 1907-1930. May 2009.

Details | BibTeX | DOI (10.1098/rsta.2008.0309)

Chaste: A test-driven approach to software development for biological modelling

J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, AG Fletcher, GR Mirams, P Murray, JM Osborne, A Walter, SJ Chapman, A Garny, I van Leeuwen, PK Maini, B Rodríguez, SL Waters, JP Whiteley, HM Byrne, DJ Gavaghan

Computer Physics Communications, Vol. (in press). 2009.

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A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems

P Pathmanathan, JP Whiteley, SJ Chapman, DJ Gavaghan

Journal of Applied Mechanics, Vol. (in press). 2009.

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An integrative computational model for intestinal tissue renewal

IMM van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, S Varma, SJ Young, J Cooper, B Doyle, J Pitt-Francis, L Momtahan, P Pathmanathan, JP Whiteley, SJ Chapman, DJ Gavaghan, OE Jensen, JR King, PK Maini, SL Waters, HM Byrne

Cell Proliferation, 2009.

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Chaste: Using Agile Programming Techniques to Develop Computational Biology Software

J Pitt-Francis, MO Bernabeu, JC, A Garny, L Momtahan, J Osborne, P Pathmanathan, B Rodriguez, JP Whiteley, DJ Gavaghan

Philosophical Transactions of the Royal Society A, Vol. 366(1878), pages 3111-3136. 2008.

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Predicting tumor location by modeling the deformation of the breast

P Pathmanathan, DJ Gavaghan, JP Whiteley, SJ Chapman, JM Brady

IEEE Transactions on Biomedical Engineering, Vol. 55(10), pages 2471-2480. 2008.

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