@techreport{RR-03-21,
  abstract = "A problem faced by many algorithms for finding transcription factor binding sites is the high number of false positive hits that result with the increased sensitivity of their prediction. A main contributing factor to this is the short and degenerate nature of these sites which results in a low signal to noise ratio. In order to counter this problem one needs to look beyond the base independence assumption. We propose a model based on templates designed to capture not only the vertical consensus but also the correlation of individual bases with the other bases of the site.",
  author = "Sumedha Gunewardena and Peter Jeavons",
  institution = "Oxford University Computing Laboratory",
  month = "October",
  number = "RR-03-21",
  title = "Finding transcription factor binding sites in DNA Sequences: A template based approach",
  year = "2003",
}