Jonathan Cooper : Publications
Journal papers
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[1] |
Toward a VPH/Physiome ToolKit Alan Garny, Jonathan Cooper and Peter J. Hunter Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 2009. |
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[2] |
Chaste: A test-driven approach to software development for biological modelling J Pitt-Francis et al. Computer Physics Communications. Vol. 180. No. 12. Pages 2452-2471. December, 2009. |
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[3] |
Chaste: Using Agile Programming Techniques to Develop Computational Biology Software Joe Pitt-Francis et al. Philosophical Transactions of the Royal Society A. Vol. 366. No. 1878. Pages 3111-3136. 2008. |
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[4] |
A computational study of discrete mechanical tissue models P Pathmanathan et al. Physical Biology. Vol. 6. No. 3. 2009. |
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[5] |
An integrative computational model for intestinal tissue renewal IMM van Leeuwen et al. Cell Proliferation. 2009. |
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[6] |
Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library Bernabeu MO et al. Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907-1930. May, 2009. |
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[7] |
CellML and Associated Tools and Techniques Alan Garny et al. Phil Trans Roy Soc A. Vol. 366. No. 1878. Pages 3017—3043. 2008. |
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[8] |
A model-driven approach to automatic conversion of physical units Jonathan Cooper and Steve McKeever Softw. Pract. Exper.. Vol. 38. No. 4. Pages 337-359. 2008. |
Conference papers
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[1] |
Experience Report: A Haskell interpreter for CellML Jonathan Cooper and Steve McKeever Pages 247—250. New York, NY, USA. October, 2007. ACM Press. |
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[2] |
On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations Jonathan Cooper, Steve McKeever and Alan Garny In PEPM '06: Proceedings of the 2006 ACM SIGPLAN Symposium on Partial Evaluation and Semantics-Based Program Manipulation. Pages 12—20. New York, NY, USA. 2006. ACM Press. |
Theses
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[1] |
Automatic Validation and Optimisation of Biological Models Jonathan Cooper PhD Thesis 2009. |